Check out my personal projects and open-source contributions on GitHub
I also post on Twitter, answer questions on Stack Overflow and write Gists of my ideas.
I predict the functions of genes using machine learning.
I want to comprehensively annotate the genome of the fission yeast S. pombe with functions. To do this, I use machine learning to identify patterns in large experimental data sets and predict which Gene Ontology terms are associated with each gene.
2016–2020 UCL, London, Wellcome Interdisciplinary PhD in Structural, Computational and Chemical Biology
2015–2016 Imperial, London, MSc in Bioinformatics and Theoretical Systems Biology
2011–2015 University of Oxford, Oxford, MBiochem in Molecular and Cellular Biochemistry
- CATH: expanding the horizons of structure-based functional annotations for genome sequences
Sillitoe I, Dawson N, Lewis TE, Das S, Lees JG, Ashford P, Tolulope A, Scholes HM, Senatorov I, Bujan A, Rodriguez-Conde FC, Dowling B, Thornton J, Orengo CA
Nucleic Acids Research, 2019 Jan 8;47(D1):D280–D284
DOI 10.1093/nar/gky1097, PubMed 30398663
- CD8+ T cell responses to lytic EBV infection: late antigen specificities as subdominant components of the total response
Abbott RJ, Quinn LL, Leese AM, Scholes HM, Pachnio A, Rickinson AB
Journal of Immunology 2013 Dec 1;191(11):5398-409
DOI 10.4049/jimmunol.1301629, PubMed 24146041